expand_KEGG_edges: Get detailed KEGG mapping information for each relation...
In KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data

Description Usage Arguments Value Examples

Extract relationship information from KGML object and re-map based on normalized node information

1	expand_KEGG_edges(KGML_file, KEGG_mappings)

`KGML_file`	An object of formal class KEGGPathway
`KEGG_mappings`	The data.frame object generated by the function expand_KEGG_mappings

A dataframe object with unique entry information for all edges documented in the KEGG pathway. Note that each row has a unique combination of values for (entry1, entry2, entry1symbol, entry2symbol).

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p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_edges <- expand_KEGG_edges(p53_KGML, p53_KEGG_mappings)