data-KcViab: A Sample data set of the package HTSanalyzeR

In HTSanalyzeR: Gene set over-representation, enrichment and network analyses for high-throughput screens

Description

'KcViab_Norm' is a normalized cellHTS object (KcViab_Norm) generated from a genome-wide RNAi screen of cell viability in Drosophila Kc167 cells (see help(KcViab)).

'KcViab_Data4Enrich' is a vector of phenotypes summarized and preprocessed from 'KcViab_Norm' (see section 4.1 of the vignette of package HTSanalyzeR for details).

'KcViab_PVals' is a vector of p-values generated by statistical tests for the summarized data of 'KcViab_Norm' (see section 5.1 of the vignetted of package HTSanalyzeR for details).

'KcViab_GSCA' is an object of class 'GSCA' (Gene Set Collection Analysis) (see section 4.2 of the vignette of package HTSanalyzeR for details).

'KcViab_NWA' is an object of class 'NWA' (NetWork Analysis) (see section 5.2 of the vignetted of package HTSanalyzeR for details).

'Biogrid_DM_Interactome' is an object of class graphNEL built from the interaction data set for Drosophila Melanogaster downloaded from the BioGRID database (version 3.1.71, accessed on Dec. 5, 2010).

Usage

##see examples for details

References

Boutros, M., Kiger, A.A., Armknecht,S., Kerr,K., Hild,M., Koch,B., Haas, S.A., Heidelberg Fly Array Consortium, Paro,R. and Perrimon, N. (2004) Genome-wide RNAi analysis of growth and viability in Drosophila cells, Science 303:832–5.

Examples

    data("KcViab_Norm")
    data("KcViab_Data4Enrich")
    data("KcViab_PVals")
    data("KcViab_GSCA")
    data("KcViab_NWA")
    data("Biogrid_DM_Interactome")
    data("Biogrid_DM_Mat")

HTSanalyzeR documentation built on Oct. 31, 2019, 7:10 a.m.