Files in HTSanalyzeR

Gene set over-representation, enrichment and network analyses for high-throughput screens

inst/doc/HTSanalyzeR-Vignette.R inst/doc/HTSanalyzeR-Vignette.pdf vignettes/Figure.pdf R/HTSanalyzeR4cellHTS2.R R/pairwiseGsea.R R/paraCheck.R R/KeggGeneSets.R R/zzz.R R/writeReportHTSA.R R/NWA-methods.R R/pairwiseGseaPlot.R R/collectionGsea.R R/gseaPlots.R R/gseaScores.R R/multiHyperGeoTest.R R/GOGeneSets.R R/classUnions.R R/aggregatePvals.R R/FDRcollectionGsea.R R/AllClasses.R R/biogridDataDownload.R R/hyperGeoTest.R R/pairwisePhenoMannWhit.R R/gseaScoresBatchParallel.R R/gseaScoresBatch.R R/annotationConvertor.R R/AllGenerics.R R/drosoAnnotationConvertor.R R/analyzeGeneSetCollections.R R/duplicateRemover.R R/cellHTS2OutputStatTests.R R/networkPlot.R R/writeHtml.R R/GSCA-methods.R R/mammalAnnotationConvertor.R R/HTSanalyzeR-internal.R R/networkAnalysis.R R/celAnnotationConvertor.R R/permutationPvalueCollectionGsea.R man/viewEnrichMap.Rd man/hyperGeoTest.Rd man/writeHTSAHtmlTail.Rd man/makeOverlapTable.Rd man/getTopGeneSets.Rd man/writeHTSAHtmlSummary.Rd man/mammalAnnotationConvertor.Rd man/pairwiseGsea.Rd man/cellHTS2OutputStatTests.Rd man/pairwisePhenoMannWhit.Rd man/appendGSTerms.Rd man/viewSubNet.Rd man/analyzeGeneSetCollections.Rd man/aggregatePvals.Rd man/changes.Rd man/pairwiseGseaPlot.Rd man/GSCA-class.Rd man/summarize.Rd man/preprocess.Rd man/GenHTSAHtmlRowUnit.Rd man/plotEnrichMap.Rd man/celAnnotationConvertor.Rd man/networkAnalysis.Rd man/makeGSEAplots.Rd man/paraCheck.Rd man/duplicateRemover.Rd man/drosoAnnotationConvertor.Rd man/reportAll.Rd man/plotSubNet.Rd man/writeHTSAHtmlTab.Rd man/writeHTSAHtmlHead.Rd man/multiHyperGeoTest.Rd man/report.Rd man/gseaScores.Rd man/gseaPlots.Rd man/htmlAttrVectorPaste.Rd man/interactome.Rd man/writeHTSAHtmlTable.Rd man/viewGSEA.Rd man/GOGeneSets.Rd man/HTSanalyzeR.Rd man/FDRcollectionGsea.Rd man/HTSanalyzeR4cellHTS2.Rd man/analyze.Rd man/NWA-class.Rd man/annotationConvertor.Rd man/biogridDataDownload.Rd man/collectionGsea.Rd man/networkPlot.Rd man/KeggGeneSets.Rd man/writeReportHTSA.Rd man/plotGSEA.Rd man/permutationPvalueCollectionGsea.Rd man/data-KcViab.Rd