Files in EGAD
Extending guilt by association by degree
README.md
EGAD documentation built on Nov. 8, 2020, 8:31 p.m.
NAMESPACE
DESCRIPTION
build/vignette.rds
data/GO.voc.RData
data/GO.mouse.RData
data/ortho.RData
data/example_annotations.RData
data/pheno.RData
data/datalist
data/attr.human.RData
data/GO.human.RData
data/attr.mouse.RData
data/example_neighbor_voting.RData
data/biogrid.RData
data/genes.RData
data/example_binary_network.RData
data/example_coexpression.RData
R/get_density.R
R/auc_multifunc.R
R/build_semantic_similarity_network.R
R/plot_density_compare.R
R/plot_network_heatmap.R
R/get_phenocarta.R
R/make_genelist.R
R/GO.human.R
R/get_expression_matrix_from_GEO.R
R/get_biogrid.R
R/extend_network.R
R/example_neighbor_voting.R
R/get_auc.R
R/auroc_analytic.R
R/repmat.R
R/ortho.R
R/neighbor_voting.R
R/example_annotations.R
R/pheno.R
R/filter_network.R
R/example_coexpression.R
R/filter_network_cols.R
R/calculate_multifunc.R
R/node_degree.R
R/plot_densities.R
R/get_roc.R
R/plot_prc.R
R/build_weighted_network.R
R/attr.mouse.R
R/plot_roc_overlay.R
R/get_expression_data_gemma.R
R/GO.mouse.R
R/build_binary_network.R
R/genes.R
R/GO.voc.R
R/conv_smoother.R
R/plot_distribution.R
R/fmeasure.R
R/filter_orthologs.R
R/get_prc.R
R/get_counts.R
R/example_binary_network.R
R/plot_value_compare.R
R/run_GBA.R
R/plot_roc.R
R/filter_network_rows.R
R/attr.human.R
R/predictions.R
R/assortativity.R
R/build_coexp_network.R
R/build_coexp_expressionSet.R
R/biogrid.R
R/make_gene_network.R
R/make_annotations.R
R/make_transparent.R
R/auprc.R
R/build_coexp_GEOID.R
matlab/prec_rec.m
matlab/voter.m
matlab/opt_ROC_scores.m
matlab/voter_ROC.m
vignettes/EGAD.Rmd
vignettes/EGAD.bib
vignettes/figures/figure_pheno_mf.png
vignettes/figures/overview_resized.png
vignettes/figures/figure_aurocs_comparisons.png
vignettes/figures/figure_pheno_nv.png
vignettes/figures/figure_mf.png
vignettes/figures/figure_nv_yeast_human.png
vignettes/figures/figure_pheno_degree_corr.png
vignettes/figures/figure_pheno_comb.png
vignettes/figures/figure_degree_corr.png
vignettes/figures/figure_mf_yeast_human.png
vignettes/figures/figure_indirect.png
vignettes/figures/figure_overlay.png
vignettes/figures/figure_smoother.png
vignettes/figures/labels_resized.png
vignettes/figures/figure_nv.png
vignettes/figures/figure_nd_yeast_human.png
vignettes/figures/network_resized.png
vignettes/figures/gba_schematic_resized.png
vignettes/figures/figure_GO_comb.png
vignettes/figures/mf_schematic.png
vignettes/figures/figure_benchmark.png
man/make_genelist.Rd
man/conv_smoother.Rd
man/build_weighted_network.Rd
man/plot_roc_overlay.Rd
man/make_transparent.Rd
man/example_binary_network.Rd
man/GO.human.Rd
man/filter_network_rows.Rd
man/build_coexp_network.Rd
man/make_gene_network.Rd
man/predictions.Rd
man/get_phenocarta.Rd
man/build_binary_network.Rd
man/GO.voc.Rd
man/plot_distribution.Rd
man/plot_roc.Rd
man/extend_network.Rd
man/build_coexp_expressionSet.Rd
man/plot_network_heatmap.Rd
man/get_biogrid.Rd
man/make_annotations.Rd
man/auprc.Rd
man/filter_network_cols.Rd
man/plot_prc.Rd
man/get_prc.Rd
man/assortativity.Rd
man/plot_value_compare.Rd
man/node_degree.Rd
man/filter_orthologs.Rd
man/auroc_analytic.Rd
man/attr.mouse.Rd
man/plot_density_compare.Rd
man/genes.Rd
man/example_neighbor_voting.Rd
man/repmat.Rd
man/plot_densities.Rd
man/run_GBA.Rd
man/example_annotations.Rd
man/get_counts.Rd
man/get_auc.Rd
man/auc_multifunc.Rd
man/get_expression_data_gemma.Rd
man/example_coexpression.Rd
man/biogrid.Rd
man/get_roc.Rd
man/pheno.Rd
man/build_semantic_similarity_network.Rd
man/GO.mouse.Rd
man/ortho.Rd
man/calculate_multifunc.Rd
man/build_coexp_GEOID.Rd
man/neighbor_voting.Rd
man/get_expression_matrix_from_GEO.Rd
man/filter_network.Rd
man/get_density.Rd
man/atrr.human.Rd
man/fmeasure.Rd
tests/testthat.R
tests/testthat/test.nv.r
tests/testthat/test.auroc.r
tests/testthat/test.mf.r
tests/testthat/test.network.r
inst/NEWS
inst/CITATION
inst/doc/EGAD.Rmd
inst/doc/EGAD.R
inst/doc/EGAD.html
inst/matlab/prec_rec.m
inst/matlab/voter.m
inst/matlab/opt_ROC_scores.m
inst/matlab/voter_ROC.m
