PlotPostVsRawFC: Plot Posterior FC vs FC

In EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Description

'PlotPostVsRawFC' helps the users visualize the posterior FC vs FC in a two condition study.

Usage

PlotPostVsRawFC(EBOut, FCOut)

Arguments

EBOut	The output of EBMultiTest function.
FCOut	The output of PostFC function.

Value

A figure shows fold change vs posterior fold change.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

PostFC

Examples

data(GeneMat)
GeneMat.small = GeneMat[c(500:600),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
FC = PostFC(EBOut)
PlotPostVsRawFC(EBOut,FC)

EBSeq documentation built on Nov. 8, 2020, 6:52 p.m.