nbkd.sf: GLM family for a negative binomial with known dispersion and...
In DESeq: Differential gene expression analysis based on the negative binomial distribution
Description
Usage
Arguments
Value
Author(s)
Description
A distribution family for use with glm. It describes a negative binomial
(as negative.binomial in the MASS package), but with a special link function, namely
eta[i] = log( mu[i] / sf[i] ), i.e., each count value is divided by its size factor before
the log is taken. This is used internally by fitNbinomGLMs.
Usage
1
nbkd.sf(r, sf)
Arguments
r
The 'size' argument (see dnbinom), i.e., the reciprocal of
the dispersion.
sf
A vector of size factors.
Value
A GLM family object.
Author(s)
Simon Anders, anders@embl.de
DESeq documentation built on April 28, 2020, 6:37 p.m.
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Description Usage Arguments Value Author(s)
Description
A distribution family for use with glm. It describes a negative binomial
(as negative.binomial in the MASS package), but with a special link function, namely
eta[i] = log( mu[i] / sf[i] ), i.e., each count value is divided by its size factor before
the log is taken. This is used internally by fitNbinomGLMs.
Usage
1 | nbkd.sf(r, sf)
|
Arguments
r |
The 'size' argument (see |
sf |
A vector of size factors. |
Value
A GLM family object.
Author(s)
Simon Anders, anders@embl.de
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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