translatePattern: translate pattern from IUPAC Extended Genetic Alphabet to...
In CRISPRseek: Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/translatePattern.R
Description
translate pattern containing the IUPAC nucleotide ambiguity codes to regular
expression. For example,Y->[C|T], R-> [A|G], S-> [G|C], W-> [A|T],
K-> [T|U|G], M-> [A|C], B-> [C|G|T], D-> [A|G|T], H-> [A|C|T],
V-> [A|C|G] and N-> [A|C|T|G].
Usage
1
Arguments
pattern
a character vector with the IUPAC nucleotide ambiguity codes
Value
a character vector with the pattern represented as regular expression
Author(s)
Lihua Julie Zhu
Examples
1
2
pattern1 <- "AACCNWMK"
translatePattern(pattern1)
CRISPRseek documentation built on Jan. 14, 2021, 2:50 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/translatePattern.R
Description
translate pattern containing the IUPAC nucleotide ambiguity codes to regular expression. For example,Y->[C|T], R-> [A|G], S-> [G|C], W-> [A|T], K-> [T|U|G], M-> [A|C], B-> [C|G|T], D-> [A|G|T], H-> [A|C|T], V-> [A|C|G] and N-> [A|C|T|G].
Usage
1 |
Arguments
pattern |
a character vector with the IUPAC nucleotide ambiguity codes |
Value
a character vector with the pattern represented as regular expression
Author(s)
Lihua Julie Zhu
Examples
1 2 | pattern1 <- "AACCNWMK"
translatePattern(pattern1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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