COMPASSfitToCountsTable: Extract a table of counts from a COMPASSResult object

In COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells

Description

Returns a table of counts and parent counts for each cell subset in a COMPASS fit.

Usage

COMPASSfitToCountsTable(
  x,
  idcol = NULL,
  parent = NULL,
  drop = NULL,
  stimName = NULL
)

Arguments

x	COMPASSResult
idcol	unquote variable name in the metadata for the subject id.
parent	character name of the parent population for this model fit. e.g. "CD4"
drop	numeric vector indicating the columns in the metadata to drop from the output. Usually sample-specific columns rather than subject specific columns.
stimName	the name of the stimulation

COMPASS documentation built on Nov. 8, 2020, 8:05 p.m.