compact.data.frame: Compacts the expanded data frame format needed by our fitting...
In CNVtools: A package to test genetic association with CNV data
Description
Usage
Arguments
Details
Value
Author(s)
Description
Small internal routine returning a more compact and user friendly version of the output of the fitting algorithm.
Usage
1
compact.data.frame(full.frame)
Arguments
full.frame
An expanded data frame (one point per data point and
per component in the fit, ie. 1,000 individuals fitted on three
components would have 3,000 rows.
Details
This function should be invisible to most users and is part of the EM
fitting procedure.
Value
A data frame in a compact version, with one row per data point and one
column for each component: P1, P2, P3 in the three component case for
the probabilities for the calls to be equal to 1,2 or 3.
Author(s)
Vincent Plagnol vincent.plagnol@cimr.cam.ac.uk and Chris Barnes christopher.barnes@imperial.ac.uk
CNVtools documentation built on April 28, 2020, 6:06 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Small internal routine returning a more compact and user friendly version of the output of the fitting algorithm.
Usage
1 | compact.data.frame(full.frame)
|
Arguments
full.frame |
An expanded data frame (one point per data point and per component in the fit, ie. 1,000 individuals fitted on three components would have 3,000 rows. |
Details
This function should be invisible to most users and is part of the EM fitting procedure.
Value
A data frame in a compact version, with one row per data point and one column for each component: P1, P2, P3 in the three component case for the probabilities for the calls to be equal to 1,2 or 3.
Author(s)
Vincent Plagnol vincent.plagnol@cimr.cam.ac.uk and Chris Barnes christopher.barnes@imperial.ac.uk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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