batchqc_circosplot: Produce Circos plot
In BatchQC: Batch Effects Quality Control Software
Description
Usage
Arguments
Value
Examples
Description
Produce Circos plot
Usage
1
batchqc_circosplot(dat, batch, AggMethod)
Arguments
dat
Given data or simulated data from rnaseq_sim()
batch
Batch covariate
AggMethod
Aggregation Method
Value
Generates Circular Dendrogram plot for the given data
Examples
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nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800,
basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
batchqc_circosplot(data.matrix, batch=batch, AggMethod='complete')
BatchQC documentation built on Nov. 8, 2020, 8:30 p.m.
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Description Usage Arguments Value Examples
Description
Produce Circos plot
Usage
1 | batchqc_circosplot(dat, batch, AggMethod)
|
Arguments
dat |
Given data or simulated data from rnaseq_sim() |
batch |
Batch covariate |
AggMethod |
Aggregation Method |
Value
Generates Circular Dendrogram plot for the given data
Examples
1 2 3 4 5 6 7 8 | nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800,
basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
batchqc_circosplot(data.matrix, batch=batch, AggMethod='complete')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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