normalizeData: Calls appropriate normalization functions depending on input...
In zoecastillo/microbiomeExplorer: Microbiome Exploration App
View source: R/aggreg_norm_functions.R
normalizeData R Documentation
Calls appropriate normalization functions depending on input parameter
The two available methods included in the package are based on either
calculating proportions or by using cumulative sum scaling (CSS),
Paulson, et al. Nat Meth 2013.
Description
Calls appropriate normalization functions depending on input parameter
The two available methods included in the package are based on either
calculating proportions or by using cumulative sum scaling (CSS),
Paulson, et al. Nat Meth 2013.
Usage
normalizeData(MRobj, norm_method)
Arguments
MRobj
the MRexperiment
norm_method
method to use for normalization; CSS or Proportional
Value
the normalized MRobj
Examples
data("mouseData", package = "metagenomeSeq")
normalizeData(mouseData, norm_method = "CSS")
zoecastillo/microbiomeExplorer documentation built on Sept. 11, 2022, 7:40 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/aggreg_norm_functions.R
| normalizeData | R Documentation |
Calls appropriate normalization functions depending on input parameter The two available methods included in the package are based on either calculating proportions or by using cumulative sum scaling (CSS), Paulson, et al. Nat Meth 2013.
Description
Calls appropriate normalization functions depending on input parameter The two available methods included in the package are based on either calculating proportions or by using cumulative sum scaling (CSS), Paulson, et al. Nat Meth 2013.
Usage
normalizeData(MRobj, norm_method)
Arguments
MRobj |
the MRexperiment |
norm_method |
method to use for normalization; CSS or Proportional |
Value
the normalized MRobj
Examples
data("mouseData", package = "metagenomeSeq")
normalizeData(mouseData, norm_method = "CSS")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.