calculatePCAs: Function to compute the PCAs for a given distance matrix
In zoecastillo/microbiomeExplorer: Microbiome Exploration App
View source: R/inter_functions.R
calculatePCAs R Documentation
Function to compute the PCAs for a given distance matrix
Description
Function to compute the PCAs for a given distance matrix
Usage
calculatePCAs(distmat, pcas)
Arguments
distmat
the distance matrix
pcas
2-element vector of PCAs to include in results
Value
the x slot limited to pcas after calling stats::prcomp on distmat
Examples
data("mouseData", package = "metagenomeSeq")
aggdat <- aggFeatures(mouseData, level = "genus")
distmat <- computeDistMat(aggdat, dist_method = "bray")
calculatePCAs(distmat, c(1,2))
zoecastillo/microbiomeExplorer documentation built on Sept. 11, 2022, 7:40 a.m.
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View source: R/inter_functions.R
| calculatePCAs | R Documentation |
Function to compute the PCAs for a given distance matrix
Description
Function to compute the PCAs for a given distance matrix
Usage
calculatePCAs(distmat, pcas)
Arguments
distmat |
the distance matrix |
pcas |
2-element vector of PCAs to include in results |
Value
the x slot limited to pcas after calling stats::prcomp on distmat
Examples
data("mouseData", package = "metagenomeSeq")
aggdat <- aggFeatures(mouseData, level = "genus")
distmat <- computeDistMat(aggdat, dist_method = "bray")
calculatePCAs(distmat, c(1,2))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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