truetime: True Experiment Time Points for HSMM Sinlge-cell RNA-seq data
In zji90/SEPA: SEPA
Description
Format
Source
References
Description
The dataset contains a data.frame with two columns specifying true experiment time points. Note that only cells on the main path are retained. Cells belonging to the contaminated path are excluded. Please check HSMMSingleCell package for details.
Format
A data.frame with two columns
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52529
References
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., ... & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature biotechnology.
zji90/SEPA documentation built on May 5, 2019, 1:36 p.m.
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Description Format Source References
Description
The dataset contains a data.frame with two columns specifying true experiment time points. Note that only cells on the main path are retained. Cells belonging to the contaminated path are excluded. Please check HSMMSingleCell package for details.
Format
A data.frame with two columns
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52529
References
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., ... & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature biotechnology.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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