Files in zhongmicai/complexHeatmap

Make Complex Heatmaps

R/00_S4_generic_methods.R R/00_size.R R/AdditiveUnit-class.R R/AnnotationFunction-class.R R/AnnotationFunction-function.R R/ColorMapping-class.R R/Heatmap-class.R R/Heatmap-draw_component.R R/Heatmap-layout.R R/Heatmap-utils.R R/HeatmapAnnotation-class.R R/HeatmapList-class.R R/HeatmapList-draw_component.R R/HeatmapList-get_order.R R/HeatmapList-layout.R R/HeatmapList-legends.R R/SingleAnnotation-class.R R/Upset.R R/annotation_axis.R R/decorate.R R/densityHeatmap.R R/global.R R/grid.Legend.R R/grid.dendrogram.R R/is_abs_unit.R R/oncoPrint.R R/overview.R R/stacked_plot.R R/utils.R R/zzz.R README.md inst/extdata/generate_random_dataset.R man/AdditiveUnit-class.rd man/AdditiveUnit.rd man/AnnotationFunction-class.rd man/AnnotationFunction.rd man/ColorMapping-class.rd man/ColorMapping.rd man/ComplexHeatmap-package.rd man/Extract.AnnotationFunction.rd man/Extract.Heatmap.rd man/Extract.HeatmapAnnotation.rd man/Extract.HeatmapList.rd man/Extract.SingleAnnotation.rd man/Extract.comb_mat.rd man/Heatmap-class.rd man/Heatmap.rd man/HeatmapAnnotation-class.rd man/HeatmapAnnotation.rd man/HeatmapList-class.rd man/HeatmapList.rd man/Legend.rd man/Legends-class.rd man/Legends.rd man/SingleAnnotation-class.rd man/SingleAnnotation.rd man/UpSet.rd man/add.AdditiveUnit.rd man/add_heatmap-Heatmap-method.rd man/add_heatmap-HeatmapAnnotation-method.rd man/add_heatmap-HeatmapList-method.rd man/add_heatmap-dispatch.rd man/adjust_dend_by_x.rd man/adjust_heatmap_list-HeatmapList-method.rd man/anno_barplot.rd man/anno_block.rd man/anno_boxplot.rd man/anno_density.rd man/anno_empty.rd man/anno_histogram.rd man/anno_horizon.rd man/anno_image.rd man/anno_joyplot.rd man/anno_lines.rd man/anno_link.rd man/anno_mark.rd man/anno_oncoprint_barplot.rd man/anno_points.rd man/anno_simple.rd man/anno_summary.rd man/anno_text.rd man/anno_zoom.rd man/annotation_axis_grob.rd man/annotation_legend_size-HeatmapList-method.rd man/c.HeatmapAnnotation.rd man/cluster_within_group.rd man/color_mapping_legend-ColorMapping-method.rd man/columnAnnotation.rd man/column_dend-Heatmap-method.rd man/column_dend-HeatmapList-method.rd man/column_dend-dispatch.rd man/column_order-Heatmap-method.rd man/column_order-HeatmapList-method.rd man/column_order-dispatch.rd man/comb_degree.rd man/comb_name.rd man/comb_size.rd man/component_height-Heatmap-method.rd man/component_height-HeatmapList-method.rd man/component_height-dispatch.rd man/component_width-Heatmap-method.rd man/component_width-HeatmapList-method.rd man/component_width-dispatch.rd man/copy_all-AnnotationFunction-method.rd man/copy_all-SingleAnnotation-method.rd man/copy_all-dispatch.rd man/decorate_annotation.rd man/decorate_column_dend.rd man/decorate_column_names.rd man/decorate_column_title.rd man/decorate_dend.rd man/decorate_dimnames.rd man/decorate_heatmap_body.rd man/decorate_row_dend.rd man/decorate_row_names.rd man/decorate_row_title.rd man/decorate_title.rd man/default_axis_param.rd man/default_get_type.rd man/dend_heights.rd man/dend_xy.rd man/dendrogramGrob.rd man/densityHeatmap.rd man/dim.Heatmap.rd man/dist2.rd man/draw-AnnotationFunction-method.rd man/draw-Heatmap-method.rd man/draw-HeatmapAnnotation-method.rd man/draw-HeatmapList-method.rd man/draw-Legends-method.rd man/draw-SingleAnnotation-method.rd man/draw-dispatch.rd man/draw_annotation-Heatmap-method.rd man/draw_annotation_legend-HeatmapList-method.rd man/draw_dend-Heatmap-method.rd man/draw_dimnames-Heatmap-method.rd man/draw_heatmap_body-Heatmap-method.rd man/draw_heatmap_legend-HeatmapList-method.rd man/draw_heatmap_list-HeatmapList-method.rd man/draw_title-Heatmap-method.rd man/draw_title-HeatmapList-method.rd man/draw_title-dispatch.rd man/extract_comb.rd man/getXY_in_parent_vp.rd man/get_color_mapping_list-HeatmapAnnotation-method.rd man/get_legend_param_list-HeatmapAnnotation-method.rd man/grid.annotation_axis.rd man/grid.boxplot.rd man/grid.dendrogram.rd man/grid.draw.Legends.rd man/heatmap_legend_size-HeatmapList-method.rd man/height.AnnotationFunction.rd man/height.Heatmap.rd man/height.HeatmapAnnotation.rd man/height.HeatmapList.rd man/height.Legends.rd man/height.SingleAnnotation.rd man/heightAssign.AnnotationFunction.rd man/heightAssign.HeatmapAnnotation.rd man/heightAssign.SingleAnnotation.rd man/heightDetails.annotation_axis.rd man/heightDetails.legend.rd man/heightDetails.legend_body.rd man/heightDetails.packed_legends.rd man/ht_global_opt.rd man/ht_opt.rd man/is_abs_unit.rd man/length.HeatmapAnnotation.rd man/length.HeatmapList.rd man/list_components.rd man/list_to_matrix.rd man/make_column_cluster-Heatmap-method.rd man/make_comb_mat.rd man/make_layout-Heatmap-method.rd man/make_layout-HeatmapList-method.rd man/make_layout-dispatch.rd man/make_row_cluster-Heatmap-method.rd man/map_to_colors-ColorMapping-method.rd man/max_text_height.rd man/max_text_width.rd man/merge_dendrogram.rd man/names.HeatmapAnnotation.rd man/names.HeatmapList.rd man/namesAssign.HeatmapAnnotation.rd man/ncol.Heatmap.rd man/nobs.AnnotationFunction.rd man/nobs.HeatmapAnnotation.rd man/nobs.SingleAnnotation.rd man/normalize_comb_mat.rd man/nrow.Heatmap.rd man/oncoPrint.rd man/order.comb_mat.rd man/packLegend.rd man/pct_v_pct.rd man/pindex.rd man/prepare-Heatmap-method.rd man/print.comb_mat.rd man/re_size-HeatmapAnnotation-method.rd man/restore_matrix.rd man/rowAnnotation.rd man/row_anno_barplot.rd man/row_anno_boxplot.rd man/row_anno_density.rd man/row_anno_histogram.rd man/row_anno_link.rd man/row_anno_points.rd man/row_anno_text.rd man/row_dend-Heatmap-method.rd man/row_dend-HeatmapList-method.rd man/row_dend-dispatch.rd man/row_order-Heatmap-method.rd man/row_order-HeatmapList-method.rd man/row_order-dispatch.rd man/set_component_height-Heatmap-method.rd man/set_component_width-Heatmap-method.rd man/set_name.rd man/set_size.rd man/show-AnnotationFunction-method.rd man/show-ColorMapping-method.rd man/show-Heatmap-method.rd man/show-HeatmapAnnotation-method.rd man/show-HeatmapList-method.rd man/show-SingleAnnotation-method.rd man/show-dispatch.rd man/size.AnnotationFunction.rd man/size.HeatmapAnnotation.rd man/size.SingleAnnotation.rd man/sizeAssign.AnnotationFunction.rd man/sizeAssign.HeatmapAnnotation.rd man/sizeAssign.SingleAnnotation.rd man/smartAlign2.rd man/str.comb_mat.rd man/subset_gp.rd man/subset_matrix_by_row.rd man/subset_vector.rd man/summary.Heatmap.rd man/summary.HeatmapList.rd man/t.comb_mat.rd man/test_alter_fun.rd man/unify_mat_list.rd man/upset_right_annotation.rd man/upset_top_annotation.rd man/width.AnnotationFunction.rd man/width.Heatmap.rd man/width.HeatmapAnnotation.rd man/width.HeatmapList.rd man/width.Legends.rd man/width.SingleAnnotation.rd man/widthAssign.AnnotationFunction.rd man/widthAssign.HeatmapAnnotation.rd man/widthAssign.SingleAnnotation.rd man/widthDetails.annotation_axis.rd man/widthDetails.legend.rd man/widthDetails.legend_body.rd man/widthDetails.packed_legends.rd tests/test-all.R tests/testthat/test-HeatmapAnnotation-size.R tests/testthat/test-UpSet.R tests/testthat/test-utiles.R tests_not_run/test-AnnotationFunction.R tests_not_run/test-ColorMapping-class.R tests_not_run/test-Heatmap-class.R tests_not_run/test-Heatmap-cluster.R tests_not_run/test-HeatmapAnnotation.R tests_not_run/test-HeatmapList-class.R tests_not_run/test-Legend.R tests_not_run/test-SingleAnnotation.R tests_not_run/test-annotation_axis.R tests_not_run/test-dendrogram.R tests_not_run/test-multiple-page.R tests_not_run/test-oncoPrint.R tests_not_run/test-upset.R tests_not_run/test-utils.R vignettes/complex_heatmap.rmd vignettes/most_probably_asked_questions.Rmd