priorMethods: "Prior" class methods

In yzheng74/permseq: Mapping protein-DNA interactions in highly repetitive regions of the genomes with prior-enhanced read mapping

Description

The package defines the following methods for the "Prior" class:

plot

Plot the DNase (or Histone selected to be used as DNase) read counts versus average over uni-read ChIP-seq read counts.

print

Print out all the information within slots of a "Prior" class.

show

Show the selected important information within a "Prior" class.

summary

Alignment details report of DNase, Histone and/or ChIP-seq files from bowtie.

names

Names of the individual slots in "Prior" object.

[

Extract part of the Prior object.

[[

Extract part of the Prior object.

[<-

Set value to the extract part of the Prior object.

[[<-

Set value to the extract part of the Prior object.

Usage

## S4 method for signature 'Prior'
plot(x, y, ...)
## S4 method for signature 'Prior'
print(x)
## S4 method for signature 'Prior'
show(object)
## S4 method for signature 'Prior'
summary(object)
## S4 method for signature 'Prior'
names(x)

Arguments

x	Prior object
y	Other parameter
...	Other parameters
object	Prior object

Author(s)

Ye Zheng, M. Constanza Rojo-Alfaro.

yzheng74/permseq documentation built on May 4, 2019, 8:47 p.m.