proteome: Proteomic data set that is used in the toy example provided...

In yigbt/multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration

Proteomic data set that is used in the toy example provided by the 'multiGSEA' package.

Description

Processed proteomics data set that will be used throughout the vignette provided by the 'multiGSEA' package. The raw data was originally published by [Quiros _et al._](http://doi.org/10.1083/jcb.201702058) and deposited at [ProteomeXchange](http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006293).

Usage

data(proteome)

Format

A tibble with 4 variables and 8275 measured proteome features:

Symbol

HGNC symbol of measured proteins.

logFC

Log2-transformed fold change between treatment and control.

pValue

P-value associated with the fold change.

adj.pValue

Adjusted p-value associated with the fold change.

Examples

data(proteome)

yigbt/multiGSEA documentation built on Oct. 31, 2024, 2:22 p.m.