sig: significance Get simplified correlation coefficients and...

In yanpd01/yyeasy: Easy Use R

significance Get simplified correlation coefficients and significance stars

Description

significance Get simplified correlation coefficients and significance stars

significance Get difference analysis results and significance labeling. The core source of this function comes from rstatix and agricolae.

Usage

get_sig(p_value, level = 3, p_adj_method = "none")

sig_label(
  formula,
  data,
  test = c("wilcox_test", "t_test", "dunn_test", "tukey_hsd", "HSD.test", "duncan.test",
    "LSD.test", "SNK.test"),
  p.adjust.method = "none",
  alpha = 0.05,
  quantile_function = "qt"
)

Arguments

p_value	p_value table
level	significance level
p_adj_method	?stats::p.adjust.methods
formula	a formula of the form x ~ group where x is a numeric variable giving the data values and group is a factor with one or multiple levels giving the corresponding groups. For example, formula = TP53 ~ cancer_group.
data	a data.frame containing the variables in the formula.
test	the name of the statistical test that is applied to the values. "wilcox_test", "t_test", "dunn_test", "tukey_hsd" comes from rstatix, "HSD.test", "duncan.test", "LSD.test", "SNK.test" comes from agricolae.
p.adjust.method	method to adjust p values for multiple comparisons. This parameter only works with the test method from rstatix.
alpha	Significant level
quantile_function	Quantile function to compute the confidence interval. Default is qt which means the t distribution and qnorm means norm distribution.

Value

Convert significance numbers to ***.

Difference analysis results and significance labeling.

Examples

get_sig(c(0.6, 0.00001, 0.0001, 0.001, 0.01, 0.04), level = 5)
sig_label(disp ~ gear, mtcars)

yanpd01/yyeasy documentation built on Dec. 1, 2022, 10:58 p.m.