ReadBrenda: Read BRENDA text file into matrix.

In y1zhou/brendaDb: The BRENDA Enzyme Database

Read BRENDA text file into matrix.

Description

For each EC entry, split the annotations into three columns:

• ID: EC number, e.g. 1.1.1.1

• field: the content of the information, e.g. protein, localization

• description: everything else

Usage

ReadBrenda(filepath, clean = TRUE)

Arguments

filepath	A string indicating the path to the text file.
clean	Boolean; if TRUE, run CleanECNumber() after reading the file.

Value

A matrix containing information about the EC entries.

Examples

brenda_txt <- system.file("extdata", "brenda_download_test.txt",
                          package = "brendaDb")
df <- ReadBrenda(brenda_txt)

y1zhou/brendaDb documentation built on Dec. 12, 2022, 3:43 a.m.