xia-lab/OptiLCMS
Optimized LC-MS Spectra Processing

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xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing
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Man pages for xia-lab/OptiLCMS
Optimized LC-MS Spectra Processing

calculate_entropy_similarityEntropy similarity between two spectra
calculate_unweighted_entropy_similarityUnweighted entropy similarity between two spectra
CentroidCheckCentroidCheck
CentroidMSDataCentroidMSData
ExecutePlanExecutePlan
Export.AnnotationExport.Annotation
Export.PeakSummaryExport.PeakSummary
Export.PeakTableExport.PeakTable
FormatMSnAnnotationTitle
FormatPeakListFormat Peak List
GaussModelGaussModel
ImportRawMSDataImport raw MS data
InitDataObjectsInitDataObjects
InitializaPlanInitializing running plan
mSetLC/MS data mSet object example
OptiLCMSOptiLCMS: A package for computating the notorious bar...
PerformDataInspectPerformDataInspect
PerformDataTrimmingPerform ROI Extraction from raw MS data (PerformDataTrimming)
PerformDBSearchingBatchPerformDBSearchingBatch
PerformDDADeconvolutionPerformDDADeconvolution
PerformDIADeconvolutionPerformDIADeconvolution
PerformMirrorPlottingPerformMirrorPlotting
PerformMSnImportPerformMSnImport
PerformParamsOptimizationPerform Parameters Optimization
PerformPeakAlignmentPerformPeakAlignment
PerformPeakAnnotationPerform peak annotation
PerformPeakFilingPerformPeakFiling
PerformPeakPickingPerformPeakPicking
PerformPeakProfilingPerform peak profiling
PerformResultsExportPerformResultsExport
PerformROIExtractionPerform ROI Extraction from raw MS data
PerformSpectrumConsenusPerformSpectrumConsenus
plotBPIsplotBPIs
plotMSfeatureplotMSfeature
plotSingleTICplotSingleTIC
PlotSpectraBPIadjPlotSpectraBPIadj
PlotSpectraInsensityStisticsPlotSpectraInsensityStistics
PlotSpectraPCAPlotSpectraPCA
PlotSpectraRTadjPlotSpectraRTadj
plotTICsplotTICs
PlotXICPlotXIC/EIC
running.planrunning.plan
SetAnnotationParamSet annotation parameters
SetGlobalParallelSetGlobalParallel
SetPeakParamSet parameters for peak profiling and parameters optimization
SetPlotParamSetPlotParam
UpdateRawfilesUpdateRawfiles
updateRawSpectraPathupdateRawSpectraPath
xia-lab/OptiLCMS documentation built on Nov. 6, 2024, 11:01 a.m.

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