computeChat: Computes the ridge pseudo-inverse of the prior information...
In wgmao/PLIER: Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
computeChat R Documentation
Computes the ridge pseudo-inverse of the prior information matrix. Used internally by PLIER but can be precomputed if running PLIER multiple times.
Description
Computes the ridge pseudo-inverse of the prior information matrix. Used internally by PLIER but can be precomputed if running PLIER multiple times.
Usage
computeChat(gsMat, lambda = 5)
Arguments
gsMat
The prior information matrix. The genes have to match the gene expression data to be analyzed exactly (same genes and same order(
lambda
The regularization paramter
wgmao/PLIER documentation built on Sept. 1, 2024, 10:25 p.m.
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| computeChat | R Documentation |
Computes the ridge pseudo-inverse of the prior information matrix. Used internally by PLIER but can be precomputed if running PLIER multiple times.
Description
Computes the ridge pseudo-inverse of the prior information matrix. Used internally by PLIER but can be precomputed if running PLIER multiple times.
Usage
computeChat(gsMat, lambda = 5)
Arguments
gsMat |
The prior information matrix. The genes have to match the gene expression data to be analyzed exactly (same genes and same order( |
lambda |
The regularization paramter |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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