inst/scripts/zeller14.R
In waldronlab/lefser: R implementation of the LEfSE method for microbiome biomarker discovery
## code to prepare example dataset goes here
## can change dataset by replacing ZellerG_2014 with any other dataset
library(curatedMetagenomicData)
library(SummarizedExperiment)
exampledata <-
curatedMetagenomicData("ZellerG_2014.metaphlan_bugs_list.stool",
counts = TRUE,
dryrun = FALSE)[[1]]
zeller14 <- as(exampledata, "SummarizedExperiment")
colData(zeller14) <- colData(zeller14)[, c(4,8)]
usethis::use_data(zeller14, overwrite = TRUE)
waldronlab/lefser documentation built on Nov. 1, 2024, 9:02 p.m.
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## code to prepare example dataset goes here
## can change dataset by replacing ZellerG_2014 with any other dataset
library(curatedMetagenomicData)
library(SummarizedExperiment)
exampledata <-
curatedMetagenomicData("ZellerG_2014.metaphlan_bugs_list.stool",
counts = TRUE,
dryrun = FALSE)[[1]]
zeller14 <- as(exampledata, "SummarizedExperiment")
colData(zeller14) <- colData(zeller14)[, c(4,8)]
usethis::use_data(zeller14, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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