geom_qlinerange: Use Line Segments and Points to Plot Quality Statistics by...
In vsbuffalo/qrqc: Quick Read Quality Control

Description Usage Arguments Value Author(s) See Also

geom_qlinerange uses multiple line segments and points to plot quality ranges. By default the 10% and 90% range in plotted in grey, the quartile range in orange, and the mean as a point in blue. It is used in qualPlot.

1	geom_qlinerange(extreme.color="grey", quartile.color="orange", mean.color="blue", median.color=NULL)

`extreme.color`	a character value indicating the color to use for the extreme values (the 10% and 90% quantiles). If `NULL`, these line seqments will not be added.
`quartile.color`	a character value indicating the color to use for the quartiles. If `NULL`, these line seqments will not be added.
`mean.color`	a character value indicating the color to use for the mean. If `NULL`, these line seqments will not be added.
`median.color`	a character value indicating the color to use for the median. If `NULL`, these line seqments will not be added.

A list of geoms from ggplot2 that this function put together, to be added to a call to ggplot which contains a data frame of quality data, i.e. from getQual.

Vince Buffalo <vsbuffalo@ucdavis.edu>

getQual, qualPlot

vsbuffalo/qrqc documentation built on May 3, 2019, 7:07 p.m.