biplotSel: simple biplot display of transformed expression data for a...

In vjcitn/pcmp: projection comparison app

Description

simple biplot display of transformed expression data for a subset of cluster discriminating genes

Usage

biplotSel(sce, selnum = 1, assaytx = function(x) log(x + 1),
  ntop = 6, ...)

Arguments

sce	a SingleCellExperiment as produced by pcmpApp
selnum	numeric(1) the cluster to display
assaytx	a function to be applied to the assay data
ntop	numeric(1) number of genes to use in PCA
...	additional parameters to biplot.prcomp, which should exclude xlabs, expand, cex, and col which are hard coded.

Examples

biplotSel(pcmp::vigAccum, selnum=4, ntop=10)

vjcitn/pcmp documentation built on May 25, 2019, 2:21 p.m.