README.md
In vjcitn/TxRegInfra2: Metadata management for multiomic specification of transcriptional regulatory networks, version 2
TxRegInfra
Some Bioconductor-oriented infrastructure for exploring transcriptional regulatory networks.
Data from studies of eQTL, DNAse footprinting and hotspot
location, and sequence-based TF binding are collected in a MongoDB
database.
A small example of such a database is available in a google drive. The file txreg_tiny.zip unzips to
a folder VJCDUMP, which is the result of a mongodump process.
On a system with a running mongodb instance, mongorestore can be used
with standard connection string and the path to the VJCDUMP folder as
second argument to populate MongoDB collections for use with this package.
vjcitn/TxRegInfra2 documentation built on Jan. 1, 2021, 12:41 p.m.
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TxRegInfra
Some Bioconductor-oriented infrastructure for exploring transcriptional regulatory networks.
Data from studies of eQTL, DNAse footprinting and hotspot location, and sequence-based TF binding are collected in a MongoDB database.
A small example of such a database is available in a google drive. The file txreg_tiny.zip unzips to
a folder VJCDUMP, which is the result of a mongodump process.
On a system with a running mongodb instance, mongorestore can be used
with standard connection string and the path to the VJCDUMP folder as
second argument to populate MongoDB collections for use with this package.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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