ggmanClumps: ggmanClumps

In veera-dr/ggman: R package for Manhattan Plots

Description

Process the clumped file from plink.

Usage

ggmanClumps(plink.clumped, index.snp.column, clumps.column, label.column = NA,
  group.column = NA)

Arguments

plink.clumped	A data frame read from plink.clumped file.
index.snp.column	Name of the column containing the index SNPs
clumps.column	Name of the column containing the clumps
label.column	Name of the column containing the labels
group.column	Name of the column containing the grouping variable

Value

An object of class 'ggmanClumps'

Examples

#just the clumps, with no label and no highlights
toy.clumps <- ggmanClumps(toy.clumped, index.snp.column = "SNP", clumps.column = "SP2")

#add labels and highlights
toy.clumps <- ggmanClumps(toy.clumped, index.snp.column = "SNP", clumps.column = "SP2",
                          group.column = "group", label.column = "label")

veera-dr/ggman documentation built on May 3, 2019, 4:59 p.m.