GRgetValues: GR values
In uc-bd2k/GRmetrics: Calculate growth-rate inhibition (GR) metrics

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GRgetValues.R

Given a SummarizedExperiment object created by GRfit, this function returns a table of the original data (in the form of "Case A") with columns for GR values and relative cell counts.

1	GRgetValues(fitData)

fitData

a SummarizedExperiment object, generated by the GRfit function.

Given a SummarizedExperiment object created by GRfit, this function returns a table of the original data (in the form of "Case A") with columns for GR values and relative cell counts. This is simply a convenient accessor function, equivalent to as.data.frame(metadata(fitData)[[1]]).

A table with GR values and relative cell counts

Nicholas Clark

To create the object needed for this function, see GRfit.

# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','treatment'))
GRvalues = GRgetValues(output1)
head(GRvalues)
## Not run: View(GRvalues)