WGBSeq: Wrapper for WGBS settings for dmrseq
In trichelab/biscuiteer: Convenience Functions for Biscuit

WGBSeq

R Documentation

Wrapper for WGBS settings for dmrseq

Description

Wrapper for WGBS settings for dmrseq

Usage

WGBSeq(bsseq, testCovariate, bpSpan = 1000, ...)

Arguments

`bsseq`	A bsseq object
`testCovariate`	The pData column to test on
`bpSpan`	Span of smoother AND 2x max gap in DMR CpGs (DEFAULT: 1000)
`...`	Other arguments to pass along to dmrseq

Value

          A GRanges object (same as from dmrseq)

Examples


  data(BS.chr21, package="dmrseq")
  dat <- BS.chr21

  wgbs <- WGBSeq(dat[1:500, ], "CellType", cutoff = 0.05,
                 BPPARAM=BiocParallel::SerialParam())

trichelab/biscuiteer documentation built on March 4, 2024, 12:22 a.m.