API for trichelab/biscuiteer
Convenience Functions for Biscuit
| Global functions | |
|---|---|
| .LCSubstr | Source code |
| .checkTabixFiles | Source code |
| .collapseCanonicalProperPair | Source code |
| .collapseDovetail | Source code |
| .collapseToFragment | Source code |
| .delayedNoNaN | Source code |
| .fetch | Source code |
| .fetchBiscuiteerData | Source code |
| .inv_rle | Source code |
| .is_gz | Source code |
| .makeGRangesFromMatrix | Source code |
| .mdvh | Source code |
| .mergeCanonicalProperPairReads | Source code |
| .mergeDovetailReads | Source code |
| .recode_rle | Source code |
| .split_rle | Source code |
| .subsettedWithin | Source code |
| BSseq-methods | Man page |
| CpGindex | Man page Source code |
| ENSR_subset.hg19 | Man page |
| ENSR_subset.hg38 | Man page |
| GRCh37.chromArm | Man page |
| GRCh38.chromArm | Man page |
| H9state23unmeth.hg19 | Man page |
| H9state23unmeth.hg38 | Man page |
| HMM_CpG_islands.hg19 | Man page |
| HMM_CpG_islands.hg38 | Man page |
| RRBSeq | Man page Source code |
| WGBSage | Man page Source code |
| WGBSeq | Man page Source code |
| _PACKAGE | Man page |
| atRegions | Man page Source code |
| binCoverage | Man page Source code |
| biscuitMetadata | Man page Source code |
| biscuiteer | Man page |
| biscuiteer-methods | Man page |
| biscuiteer-package | Man page |
| byChromArm | Man page Source code |
| byExtremality | Man page Source code |
| checkBiscuitBED | Man page Source code |
| clocks | Man page |
| condenseSampleNames | Man page Source code |
| coverage | Man page |
| extremality | Man page Source code |
| fexpit | Man page Source code |
| filterLoci | Man page Source code |
| fixAge | Man page Source code |
| fixNAs | Man page Source code |
| fixed,BSseq-method | Man page |
| flogit | Man page Source code |
| geno,BSseq,ANY-method | Man page |
| getBiscuitMetadata | Man page |
| getClock | Man page Source code |
| getLogitFracMeth | Man page Source code |
| getMvals | Man page |
| getSmoothedLogitFrac | Source code |
| grToSeg | Man page Source code |
| header | Man page |
| header,BSseq-method | Man page |
| hg19.chromArm | Man page |
| hg38.chromArm | Man page |
| info,BSseq-method | Man page |
| loadBiscuit | Man page |
| makeBSseq | Man page Source code |
| meta,BSseq-method | Man page |
| readBiscuit | Man page Source code |
| readEpibed | Man page Source code |
| reference | Man page |
| samples,BSseq-method | Man page |
| segToGr | Man page Source code |
| seqinfo.hg19 | Man page |
| seqinfo.hg38 | Man page |
| seqinfo.mm10 | Man page |
| simplifySampleNames | Man page Source code |
| summarizeBsSeqOver | Man page Source code |
| tabixRetrieve | Man page Source code |
| unionize | Man page Source code |
