dot-AdjacencyMatrix: Create S4 class AdjacencyMatrix

In tnaake/MetNet: Inferring metabolic networks from untargeted high-resolution mass spectrometry data

Create S4 class AdjacencyMatrix

Description

The class 'AdjacencyMatrix' extends the 'SummarizedExperiment' class. It will add the slots 'type', 'directed', and 'thresholded'.

Details

The slot 'type' is of type '"character"', storing the type of the '"AdjacencyMatrix"', i.e. '"structural"', '"statistical"', or '"combined"'. The slot 'directed' is of type '"logical"', storing if the adjacency matrix is directed or not. The slot 'thresholded' is of type '"logical"', storing if the adjacency matrix was thresholded, e.g. if the functions 'rtCorrection' or 'threshold' were applied on the 'structural' or 'statistical' 'AdjacencyMatrix' objects.

If any of the 'AdjacencyMatrix' objects passed to the 'combine' function was 'directed = TRUE' or 'thresholded = TRUEs' the 'combine' 'AdjacencyMatrix' object will be 'directed = TRUE' or 'thresholded = TRUE'.

Value

class generator function for class 'AdjacencyMatrix'

Author(s)

Thomas Naake, [e-mail]

tnaake/MetNet documentation built on Nov. 4, 2024, 4:45 a.m.