README.md

In tidymass/metid: Metabolite identification based on MS1 and MS2 spectra

metid

metid is a part of tidymass

About

metid is a R package which is used for metabolite identification based on in-house database and public database based on accurate mass (m/z), retention time (RT) and/or MS2 spectra.

Installation

You can install metid from GitLab

if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("tidymass/metid")

or Github

remotes::install_github("tidymass/metid")

metid is a part of tidymass, so you can also install it by installing tidymass.

Usage

Please see the Help documents page to get the instruction of metid.

Need help?

If you have any questions about metid, please don’t hesitate to email me ([e-mail]).

shenzutao1990

[e-mail]

Twitter

M339, Alway Buidling, Cooper Lane, Palo Alto, CA 94304

Citation

If you use metid in your publications, please cite this paper:

1. Xiaotao Shen, Si Wu, Liang Liang, Songjie Chen, Kevin Contrepois, Zheng-Jiang Zhu*, Michael Snyder* (Corresponding Author). metID: A R package for automatable compound annotation for LC−MS-based data. Bioinformatics, btab583, https://doi.org/10.1093/bioinformatics/btab583

2. Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022). Weblink

Thanks very much!

tidymass/metid documentation built on Oct. 8, 2024, 10:32 p.m.