tmb: Estimate Tumor Mutation Burden
In thesushantpatil/maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
Value
Examples
Description
Estimates Tumor Mutation Burden in terms of per megabases
Usage
1
Arguments
maf
maf MAF object
captureSize
capture size for input MAF in MBs. Default 50MB.
logScale
Default TRUE. For plotting purpose only.
Value
data.table with TMB for every sample
Examples
1
2
3
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tmb(maf = laml)
thesushantpatil/maftools documentation built on May 18, 2020, 9:54 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Estimates Tumor Mutation Burden in terms of per megabases
Usage
1 |
Arguments
maf |
maf |
captureSize |
capture size for input MAF in MBs. Default 50MB. |
logScale |
Default TRUE. For plotting purpose only. |
Value
data.table with TMB for every sample
Examples
1 2 3 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tmb(maf = laml)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.