tcgaDriverBP: Compare genes to known TCGA drivers and their biological...
In thesushantpatil/maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
References
Examples
Description
A small function which uses known cancer driver genes and their associatd pathways from TCGA cohorts. See reference for details
Usage
1
tcgaDriverBP(m, genes = NULL, top = 20, fontSize = 0.7)
Arguments
m
an MAF object
genes
genes to compare. Default 'NULL'.
top
Top number of genes to use. Mutually exclusive with 'genes' argument. Default 20
fontSize
Default 0.7
References
Bailey MH, Tokheim C, Porta-Pardo E, et al. Comprehensive Characterization of Cancer Driver Genes and Mutations . Cell. 2018;173(2):371–385.e18. doi:10.1016/j.cell.2018.02.060
Examples
1
2
3
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tcgaDriverBP(m = laml)
thesushantpatil/maftools documentation built on May 18, 2020, 9:54 p.m.
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Description Usage Arguments References Examples
Description
A small function which uses known cancer driver genes and their associatd pathways from TCGA cohorts. See reference for details
Usage
1 | tcgaDriverBP(m, genes = NULL, top = 20, fontSize = 0.7)
|
Arguments
m |
an |
genes |
genes to compare. Default 'NULL'. |
top |
Top number of genes to use. Mutually exclusive with 'genes' argument. Default 20 |
fontSize |
Default 0.7 |
References
Bailey MH, Tokheim C, Porta-Pardo E, et al. Comprehensive Characterization of Cancer Driver Genes and Mutations . Cell. 2018;173(2):371–385.e18. doi:10.1016/j.cell.2018.02.060
Examples
1 2 3 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tcgaDriverBP(m = laml)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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