Files in tdrose/mosbi

Molecular Signature identification using Biclustering

NEWS.md R/RcppExports.R R/bicluster.R R/bicluster_net_methods.R R/ensemble_bicluster.R R/extract_BicARE.R R/extract_akmbiclust.R R/extract_biclust.R R/extract_biclustpy.R R/extract_fabia.R R/extract_isa.R R/feature_louvain_overlap.R R/filter_biclusters.R R/get_biclusters.R R/misc.R R/mosbi-package.R R/mouse_data.R R/pipeline.R R/run_algorithms.R README.md man/NoBFBiclusters.Rd man/algohistogram.Rd man/apply_threshold-bicluster_net-method.Rd man/apply_threshold-cooccurrence_net-method.Rd man/apply_threshold.Rd man/attr_overlap.Rd man/attributeConnector.Rd man/attribute_graph.Rd man/bicluster-class.Rd man/bicluster_heatmap-bicluster-matrix-method.Rd man/bicluster_heatmap.Rd man/bicluster_net-class.Rd man/bicluster_net_to_igraph-bicluster_net-method.Rd man/bicluster_net_to_igraph.Rd man/bicluster_network.Rd man/bicluster_to_matrix-matrix-bicluster-method.Rd man/bicluster_to_matrix.Rd man/check_names.Rd man/clean_bicluster_list.Rd man/colhistogram.Rd man/cooccurrence_net-class.Rd man/cooccurrence_net_to_igraph-cooccurrence_net-method.Rd man/cooccurrence_net_to_igraph.Rd man/cpp_matrix_subsetting.Rd man/detect_elements.Rd man/dim-bicluster-method.Rd man/distance_matrix.Rd man/ensemble_biclusters.Rd man/feature_louvain_overlap.Rd man/feature_network.Rd man/filter_bicluster_size.Rd man/filter_biclusters.Rd man/filter_matrix.Rd man/filter_subsets.Rd man/full_graph.Rd man/getAkmbiclustClusters.Rd man/getBFCluster.Rd man/getBicAREbiclusters.Rd man/getBiclustClusters.Rd man/getBiclustpyClusters.Rd man/getFabiaClusters.Rd man/getIsaClusters.Rd man/getQUBIC2biclusters.Rd man/get_adjacency-bicluster_net-method.Rd man/get_adjacency.Rd man/get_algorithms.Rd man/get_bic_net_algorithms-bicluster_net-method.Rd man/get_bic_net_algorithms.Rd man/get_biclusters.Rd man/get_louvain_communities-bicluster_net-method.Rd man/get_louvain_communities-cooccurrence_net-method.Rd man/get_louvain_communities.Rd man/getallBFClusters.Rd man/has_names.Rd man/is_subset_or_identical.Rd man/mouse_data.Rd man/network_edge_strength.Rd man/network_edge_strength_float.Rd man/node_size.Rd man/occurance_matrix.Rd man/occurance_table.Rd man/p_overlap.Rd man/p_overlap_2d.Rd man/p_overlap_2d_higher.Rd man/p_overlap_higher.Rd man/plot-bicluster_net-missing-method.Rd man/plot-cooccurrence_net-missing-method.Rd man/plot_algo_network.Rd man/plot_piechart_bicluster_network.Rd man/randomize_matrix.Rd man/replace_threshold.Rd man/replace_values.Rd man/replace_values_float.Rd man/rowhistogram.Rd man/run_akmbiclust.Rd man/run_bimax.Rd man/run_cc.Rd man/run_fabia.Rd man/run_isa.Rd man/run_plaid.Rd man/run_qubic.Rd man/run_quest.Rd man/run_spectral.Rd man/run_unibic.Rd man/run_xmotifs.Rd man/sample_biclusters.Rd man/select_biclusters_from_bicluster_network-bicluster_net-list-method.Rd man/select_biclusters_from_bicluster_network.Rd man/set_bicluster_names-bicluster-matrix-method.Rd man/set_bicluster_names.Rd man/similarity_matrix.Rd man/transpose_bicluster.Rd man/validate_bicluster.Rd man/write_graphml.Rd man/write_matrix.Rd man/zero_subsetting.Rd tests/testthat.R tests/testthat/test_bicluster_net.R tests/testthat/test_cpp_methods.R tests/testthat/test_prob.R tests/testthat/test_similarity.R vignettes/example-workflow.Rmd vignettes/similarity-metrics-evaluation.Rmd