get_louvain_communities-cooccurrence_net-method: Get louvain communities from a co-occurrence network

In tdrose/mosbi: Molecular Signature identification using Biclustering

Get louvain communities from a co-occurrence network

Description

Extracts the louvain communities from a cooccurrence_net object using the louvain modularity optimization from the igraph package (cluster_louvain).

Usage

## S4 method for signature 'cooccurrence_net'
get_louvain_communities(bic_net, min_size = 2, bics = NULL)

Arguments

bic_net	A cooccurrence_net object.
min_size	Minimum size of a louvain community to be returned (minimum value is 2).
bics	Not used.

Value

A list of cooccurrence_net objects.

Examples

m <- matrix(seq(1:16), nrow=4)
# m <- matrix(rnorm(10000), nrow=100)
# bics <- c(run_fabia(m), run_isa(m), run_plaid(m))
# fn <- feature_network(bics, m)
# get_louvain_communities(fn)

tdrose/mosbi documentation built on May 4, 2022, 3:22 p.m.