checkMiRNAAlive: Check the miRNA status(Alive or Dead)

In taoshengxu/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function checks the miRNA status (Alive or Dead) in the latest miRBase version.

Usage

checkMiRNAAlive(Accessions, verbose = TRUE)

Arguments

Accessions	A character vector representing the miRNA Accessions in miRBase.
verbose	Logical value. If true, the dead miRNAs will be printed the console.

Value

A character vector of Accessions for all alive miRNAs. The names of the return vector are the position indexes in the input Accessions.

Author(s)

Xu, Taosheng [e-mail]

Examples

data(miRNATest)
## The input is miRNA Accessions
Accessions=miRNATest$Accession
alive_Accession1=checkMiRNAAlive(Accessions)

##The input is miRNA names
miRNANames=miRNATest$miRNA_Name
version=checkMiRNAVersion(miRNANames,verbose = TRUE)
result=miRNA_NameToAccession(miRNANames,version = version)
Accessions=result$Accession
alive_Accession2=checkMiRNAAlive(Accessions)

taoshengxu/miRBaseConverter documentation built on April 10, 2020, 7:04 p.m.