prepare_data_for_annotation: Prepare input for annotation
In szymczak-lab/preprocessHighResMS: Preprocessing of spectra data from high resolution mass spectrometry
Description
Usage
Arguments
Value
Examples
View source: R/annotate_features.R
Description
Extract information for annotation from SummarizedExperiment object. For
each feature, the median mz value across all samples will be used as
measured mz value and the sum of all intensities for the intensity value.
Usage
1
Arguments
se
RangedSummarizedExperiment-class
object
Value
data.frame with the following information about measured features:
id: unique identifier
mz: measured mz value
intensity: measured intensity
no.peak.detected: number of detected peaks.
Examples
1
2
data("se.example")
dat = prepare_data_for_annotation(se = se.example)
szymczak-lab/preprocessHighResMS documentation built on Oct. 6, 2020, 12:50 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_features.R
Description
Extract information for annotation from SummarizedExperiment object. For each feature, the median mz value across all samples will be used as measured mz value and the sum of all intensities for the intensity value.
Usage
1 |
Arguments
se |
|
Value
data.frame with the following information about measured features:
id: unique identifier
mz: measured mz value
intensity: measured intensity
no.peak.detected: number of detected peaks.
Examples
1 2 | data("se.example")
dat = prepare_data_for_annotation(se = se.example)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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