API for szymczak-lab/QCnormSE
Quality Control of Normalized Gene Expression Data
| Global functions | |
|---|---|
| aggregate_by_new_id | Man page Source code |
| calculate_mds_pca | Man page Source code |
| check_batch_effects | Man page Source code |
| check_sex | Man page Source code |
| combine_se_objects | Man page Source code |
| convert | Source code |
| define_batches | Man page Source code |
| detect_duplicated_samples | Man page Source code |
| extract_detection_pvalue | Man page Source code |
| extract_geo_characteristics | Man page Source code |
| extract_scan_date | Man page Source code |
| get.celfile.date | Source code |
| get_geo_data | Man page Source code |
| get_outliers | Source code |
| get_outliers_mds_pca_2d | Source code |
| info.sex.genes | Man page |
| log_transform | Man page Source code |
| normalize_counts | Man page Source code |
| plot_distribution | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_mds_pca | Man page Source code |
| plot_mds_pca_2d | Man page Source code |
| prepare_var_for_plot | Source code |
| remove_genes | Man page Source code |
| remove_samples | Man page Source code |
| se.gene | Man page |
| se.probeset | Man page |
