README.md

In systemPipeR/spsBio: spsBio: A systemPipeShiny plugin for biological data visualization

spsBio

spsBio is a systemPipeShiny(SPS) plugin that provides additional plotting functions and SPS tabs to visualize biological data.

Quick start

Install

To install SPS and spsBio:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("systemPipeR/systemPipeShiny", build_vignettes=TRUE, dependencies=TRUE)
BiocManager::install("systemPipeR/spsBio", build_vignettes=TRUE, dependencies=TRUE)

Add the plugin

Before starting with SPS, you need to create a SPS project:

systemPipeShiny::spsInit()

Once the project is created, change your working directory to the project if you selected change_wd = FALSE in the previous step. Then run:

systemPipeShiny::spsLoadPlugin("spsBio")

That should be all you need. In your global.R, specify you want to run this plugin when app starts:

{r, eval=FALSE} sps_app <- sps( vstabs = "", plugin = "spsBio", server_expr = { msg("Custom expression runs -- Hello World", "GREETING", "green") } )

systemPipeR/spsBio documentation built on Oct. 2, 2020, 9:30 a.m.