mergeNoiseStringCoverage-noiseIdentifiedList-method: Merge noiseIdentifiedList and stringCoverageList.

In svilsen/STRMPS: Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Description

mergeNoiseStringCoverage merges noiseIdentifiedList-objects and stringCoverageList-objects.

Usage

  ## S4 method for signature 'noiseIdentifiedList'
mergeNoiseStringCoverage(stringCoverageListObject,
  noiseGenotypeIdentifiedListObject)

Arguments

stringCoverageListObject	a stringCoverageList-object, created using the stringCoverage-function.
noiseGenotypeIdentifiedListObject	a noiseGenotypeIdentifiedList-object, created using the identifyNoise-function.

Value

Returns a list, with an element for every marker in extractedReadsList-object, each element contains the string coverage of all unique strings of a given marker.

Examples

# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")
# Genotypes identified by 'getGenotype()'
data("genotypeList")
# Noise identified by 'identifyNoise()'
data("noiseList")

mergeGenotypeStringCoverage(stringCoverageList, genotypeList)
mergeNoiseStringCoverage(stringCoverageList, noiseList)

svilsen/STRMPS documentation built on May 31, 2019, 7:55 a.m.