README.md

In supatt/r3Cseq: Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

r3Cseq

r3Cseq: an R package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data.

Installation from the BioC is recommended.

The r3Cseq package can be easily installed using the usual Bioconductor method:

```{r, eval = F} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("r3Cseq")

It can be also installed from the developer's GitHub :
```{r, eval = F}
library(devtools)
install_github("supatt-lab/r3Cseq")

Important update

The BioC3.9 in R3.6 will not anymore support the RangedData which is mainly used by r3Cseq in previous versions. The updated version of r3Cseq has been migrated to use the GRanges to support BioC3.9 in R3.6.

Documentation

The documentation for the version of this package can be found in https://github.com/supatt/r3Cseq/blob/master/vignettes folder. How to use to package is also described on http://r3cseq.genereg.net/Site/index.html.

supatt/r3Cseq documentation built on May 3, 2019, 1:46 p.m.