plotCodonUsage-methods: description of function plotCodonUsage

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

description of function plotCodonUsage

Description

plots the codon usage for one sample The function uses sampleCodonUsage() to extract this information from for the sample

Arguments

x	the tRNAMINT object
sname	the sample you want to depict
codons	the codon list to use default=all
min_reads	use all tRNA fragments with at least that many reads for the sample default=1
tRF.reliability	MINT reports an exclusive and ambiguous set of tRNA fragments state one of them or use both default=NULL == both
tRF.type	MINT reports different types of tRNA fragments (3'-half, 5'-half, ...) default=NULL == use all
main	the figure title default="Pie Chart"
color	a vector of color information to use for the codons default= rainbow
fname	the filename to plot to as png (default use x11 as plotting device)

stela2502/BioData documentation built on Feb. 27, 2025, 6:20 a.m.