clusters_gene-methods: description of function clusters_gene

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

Clusters the data either based on the raw data values or any MDS data type and adds the grouping into the annotation table.

Arguments

dataObj	the BioData object
clusterby	cluster on raw data or MDS clustered data default="raw"
useGrouping	do nothing and simply use tis grouping default=NULL
groups.n	how many groups should be detected default= 3
ctype	cluster type - either 'hierarchical clust' or 'kmeans' default = 'hierarchical clust'
onwhat	this option has been kept for the Fluidigm data as there FACS data can also be used default = 'Expression'
cmethod	the method to used with the hclust clustering (default = 'ward.D2')
name	the name for the new grouping (default = 'auto_clusters_gene.1:n')

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.