ontologyLogPage-methods: description of function ontologyLogPage

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

description of function ontologyLogPage

Description

creates the GO analysis for a gene list and puts it into the report.

Usage

ontologyLogPage(
  x,
  genes,
  ontology = "BP",
  topNodes = 10,
  GOfname = "GOgenes.csv",
  ...
)

Arguments

x	the BioData object
genes	a list of gene symbols (IMPORTANT)
ontology	which GO ontology to choose from (default = "BP")
topNodes	how many pathways to return (default 10)
GOfname	file to export the results to (default GOgenes.csv)
...	unused

stela2502/BioData documentation built on Feb. 27, 2025, 6:20 a.m.