groups_boxplot-methods: description of function groups_boxplot

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

This function can be used to get an overview of the different gene level groups in

an BioData object. It uses the linux montage command to merge all different boxplots

into one figure

Arguments

x	the BioData object
groupCol	the column in the samples table that contains the sample grouping information
groupRow	the column in the annotation table hat contains the gene grouping information
svg	create the single boxplots as svg or (default png) files
fname	the filename extension files are created by paste(x$outpath,fname,<GroupID>,"_boxplot")
Collapse	if set will lead to a collapse of the sample groups into one value per gene. Supports all collaps by options.

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.