PartialTests-methods: description of function PartialTests

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

description of function PartialTests

Description

Run tests firs subselecting the BioData object on the outer grouping and calculating tests on the inner grouping.

Usage

PartialTests(
  obj,
  groupA,
  groupB,
  pcut = 1e-05,
  logfc.threshold = 0.1,
  minPct = 0.1
)

Arguments

obj	The BioData object
groupA	the outer grouping column name
groupB	the inner grouping column name
pcut	p cutoff value for gene selection default=1e-5
logfc.threshold	Cpp test option default= .1
minPct	Cpp test option default= .1

Details

PartialTests should take two column names and apply stat tests on sub-samples using group1 and test for differentials in group2. The stat results are saved inside the original R6 object All differential genes are returned as list.

stela2502/BioData documentation built on Feb. 27, 2025, 6:20 a.m.