Get_PartialTest_Obj-methods: description of function Get_PartialTest_Obj

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

description of function Get_PartialTest_Obj

Description

Process the 2 group comparison data and return a summary object

Usage

Get_PartialTest_Obj(
  obj,
  groupA,
  groupB,
  k = NULL,
  pcut = 1e-05,
  logfc.threshold = 0.1,
  minPct = 0.1,
  debug = F
)

Arguments

obj	The BioData object
groupA	the outer grouping column name
groupB	the inner grouping column name
k	amount of gene groups (default 1 per 20 genes)
pcut	the cutoff p value default=1e-5
logfc.threshold	Cpp test option default= .1
minPct	Cpp test option default= .1
debug	lets you debug the mds part default false

stela2502/BioData documentation built on Feb. 27, 2025, 6:20 a.m.