LowMACA_AML: Example of a LowMACA object

In ste-depo/LowMACA: LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Example of a LowMACA object

Description

A data frame containing TCGA AML data in the format accepted by LowMACA

Usage

data("LowMACA_AML")

Format

A data.frame of 8 columns:

1. Entrez gene ID number

2. Gene_Symbol HGNC official gene symbol

3. Amino_Acid_Letter original amino acid letter in the position of the mutation

4. Amino_Acid_Position position of the mutation relative to the protein

5. Amino_Acid_Change amino acid change in hgvs format, like G12V

6. Mutation_Type classification of mutation according to MAF format.

7. Sample name of the sample where the mutation was found

8. Tumor_Type type of tumor, if applicable

Source

Adapted from TCGA ftp repository

See Also

MAF format specification HGVS

Examples

#Load LowMACA_AML and show its structure
data(LowMACA_AML)
str(LowMACA_AML)

ste-depo/LowMACA documentation built on Oct. 15, 2022, 11:53 p.m.