getPConfirmation: Return unadjusted confirmation hypothesis p-values from a...

In statOmics/stageR: stageR: stage-wise analysis of high throughput gene expression data in R

Description

Return unadjusted confirmation hypothesis p-values from a stageRClass object.

Usage

getPConfirmation(object, ...)

## S4 method for signature 'stageR'
getPConfirmation(object)

## S4 method for signature 'stageRTx'
getPConfirmation(object)

Arguments

object

an object of the stageRClass class.

Value

A matrix of the unadjusted p-values to be used in the confirmation stage.

Methods (by class)

• stageRTx: Return unadjusted confirmation hypothesis p-values from a stageRClass object.

Examples

pScreen=c(seq(1e-10,1e-2,length.out=100),seq(1e-2,.2,length.out=100),seq(.2,1,length.out=100))
names(pScreen)=paste0("gene",1:300)
pConfirmation=matrix(runif(900),nrow=300,ncol=3)
dimnames(pConfirmation)=list(paste0("gene",1:300),c("H1","H2","H3"))
stageRObj <- stageR(pScreen=pScreen, pConfirmation=pConfirmation)
getPConfirmation(stageRObj)

statOmics/stageR documentation built on Dec. 15, 2021, 2:58 a.m.