read_proteome: Read the proteome of a given organism

In ssarda/genomeutils: Utilities for Genome Analysis

Description

This function reads an organism specific genome stored in a defined file format.

Usage

read_proteome(file, format, ...)

Arguments

file	a character string specifying the path to the file storing the genome.
format	a character string specifying the file format used to store the proteome, e.g. "fasta", "fastq".
...	additional arguments that are used by the [Biostrings]readDNAStringSet function.

Value

A data.table storing the gene id in the first column and the corresponding sequence as string in the second column.

ssarda/genomeutils documentation built on May 30, 2019, 8:42 a.m.