defunct: Defunct Functions in Package 'GWASTools'
In smgogarten/GWASTools: Tools for Genome Wide Association Studies
GWASTools-defunct R Documentation
Defunct Functions in Package ‘GWASTools’
Description
These functions are defunct and no longer available.
Details
The following functions are defunct; use the replacement indicated below:
pedigreeClean: pedigreeCheck
pedigreeFindDuplicates: pedigreeCheck
ncdfCreate: createDataFile
ncdfAddData: createDataFile
ncdfAddIntensity: createAffyIntensityFile
ncdfCheckGenotype: checkGenotypeFile
ncdfCheckIntensity: checkIntensityFile
ncdfSetMissingGenotypes: setMissingGenotypes
gdsSetMissingGenotypes: setMissingGenotypes
ncdfImputedDosage: imputedDosageFile
gdsImputedDosage: imputedDosageFile
gdsCheckImputedDosage: checkImputedDosageFile
assocTestRegression: assocRegression
assocTestCPH: assocCoxPH
assocTestFisherExact: batchFisherTest
gwasExactHW: exactHWE
ncdfSubset: gdsSubset
ncdfSubsetCheck: gdsSubsetCheck
plinkToNcdf: snpgdsBED2GDS
convertVcfGds: snpgdsVCF2GDS
smgogarten/GWASTools documentation built on May 18, 2024, 1:19 a.m.
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| GWASTools-defunct | R Documentation |
Defunct Functions in Package ‘GWASTools’
Description
These functions are defunct and no longer available.
Details
The following functions are defunct; use the replacement indicated below:
pedigreeClean:pedigreeCheckpedigreeFindDuplicates:pedigreeCheckncdfCreate:createDataFilencdfAddData:createDataFilencdfAddIntensity:createAffyIntensityFilencdfCheckGenotype:checkGenotypeFilencdfCheckIntensity:checkIntensityFilencdfSetMissingGenotypes:setMissingGenotypesgdsSetMissingGenotypes:setMissingGenotypesncdfImputedDosage:imputedDosageFilegdsImputedDosage:imputedDosageFilegdsCheckImputedDosage:checkImputedDosageFileassocTestRegression:assocRegressionassocTestCPH:assocCoxPHassocTestFisherExact:batchFisherTestgwasExactHW:exactHWEncdfSubset:gdsSubsetncdfSubsetCheck:gdsSubsetCheckplinkToNcdf:snpgdsBED2GDSconvertVcfGds:snpgdsVCF2GDS
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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